Protein Concepts Dictionary

Tableau information

Concept source:  d3kked_  amino acid (a.a.) range (GLU221)(GLY315)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEHHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLU221)  (ASN237) H1
	  (THR245)  (SER251) E2
	  (VAL252)  (GLY266) H3
	  (ARG268)  (LEU273) H4
	  (LEU273)  (ASN279) E5
	  (THR281)  (THR286) H6
	  (PRO289)  (VAL294) E7
	  (LEU298)  (GLY315) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2      155.2°   E2                                               
H3      -48.3°  144.7°   H3                                        
H4       48.9° -110.4°   96.8°   H4                                 
E5      148.8°  -18.7° -162.0°  -99.8°   E5                          
H6      -53.7°  150.6°   29.9°  -98.1° -150.6°   H6                   
E7       98.1°  -66.2°  146.4°  -50.1°  -51.3° -134.5°   E7            
H8      125.9°  -30.5° -154.1°   80.0°  -27.5° -175.4°   41.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3kkeb_ :   (ALA222)  (GLY315)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d3kkec_ :   (ALA222)  (GLY315)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d1sxgb_ :   (THR222)  (LYS311)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Glucose-resistance amylase regulator CcpA, C-terminal domain |Bacillus megaterium [TaxId: 1404]
 d2fepa_ :   (THR223)  (ALA300)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d1rzra2 :   (THR222)  (LYS311)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Glucose-resistance amylase regulator CcpA, C-terminal domain |Bacillus megaterium [TaxId: 1404]
 d3k4hb_ :   (SER175)  (ALA265)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Bacillus cytotoxicus [TaxId: 315749]
 d3kked_ :   (GLU221)  (GLY315)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d1sxga_ :   (THR222)  (LYS311)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Glucose-resistance amylase regulator CcpA, C-terminal domain |Bacillus megaterium [TaxId: 1404]
 d3kkea_ :   (ALA222)  (GLY315)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d2o20f_ :   (GLU233)  (LYS311)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Glucose-resistance amylase regulator CcpA, C-terminal domain |Lactococcus lactis [TaxId: 1358]
 d3miza_ :   (TYR229)  (GLY316)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhizobium etli [TaxId: 347834]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.93