Protein Concepts Dictionary

Tableau information

Concept source:  d1l7ma_  amino acid (a.a.) range (LYS144)(ILE210)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEHHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LYS144)  (GLU155) H1
	  (THR162)  (GLY166) E2
	  (GLY168)  (ILE172) H3
	  (ILE172)  (ALA178) H4
	  (GLY179)  (CYS185) E5
	  (PRO188)  (ALA194) H6
	  (ASP195)  (GLU199) E7
	  (ASP202)  (ILE210) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2      151.7°   E2                                               
H3      -65.3° -142.6°   H3                                        
H4      -37.7° -157.3°  -44.3°   H4                                 
E5      132.5°  -20.3° -162.0° -145.8°   E5                          
H6      -42.3° -154.6°   42.1°   -4.7° -146.1°   H6                   
E7      112.8°  -39.5°  177.3°  133.0°  -19.7° -135.2°   E7            
H8      -54.7°  151.1°  -24.5°  -22.4°  156.5°   19.0°  152.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3daob_ :   (SER192)  (LEU264)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Eubacterium rectale
 d3mmzc_ :    (LYS87)  (ALA155)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Streptomyces avermitilis [TaxId: 227882]
 d1l7ma_ :   (LYS144)  (ILE210)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d1l7ob_ :   (LYS644)  (ILE710)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d1f5sb_ :   (ALA643)  (ILE710)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d1y8aa1 :   (GLY182)  (LYS261)   [view usage] : c.108.1.24 |HAD-like |HAD-like |AF1437-like |Hypothetical protein AF1437 |Archaeoglobus fulgidus [TaxId: 2234]
 d2o3sa_ :   (PRO184)  (LYS289)   [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
 d2p9jb_ :    (LYS85)  (ASP162)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
 d1l7mb_ :   (LYS644)  (LYS708)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d3daoa_ :   (SER192)  (SER262)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Eubacterium rectale
 d1r8qa_ :    (ASP72)  (GLN180)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Human (Homo sapiens), ARF1 [TaxId: 9606]
 d1nrwa_ :   (SER213)  (LYS282)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Hypothetical protein YwpJ |Bacillus subtilis [TaxId: 1423]
 d3mmzd_ :    (LYS87)  (GLY160)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Streptomyces avermitilis [TaxId: 227882]
 d3niwa_ :   (ASP195)  (PHE267)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
 d3mmza_ :    (ASP88)  (GLY160)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Streptomyces avermitilis [TaxId: 227882]
 d3wxme1 :    (VAL98)  (LEU222)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
 d3ewib_ :    (ASP83)  (SER165)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108,    c.23,    c.37