Protein Concepts Dictionary

Tableau information

Concept source:  d2oolb1  amino acid (a.a.) range (ALA219)(GLU330)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEHHEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA219)  (PRO229) H1
	  (PRO229)  (ASP235) E2
	  (SER260)  (ARG263) H3
	  (PRO267)  (GLY277) H4
	  (HIS279)  (ASP289) E5
	  (ILE296)  (LEU301) E6
	  (PRO303)  (SER307) E7
	  (TYR308)  (GLU330) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2      109.7°   E2                                               
H3     -133.6°  -73.3°   H3                                        
H4      -89.8°  -60.8°   49.9°   H4                                 
E5      -77.3°  172.3°   99.8°  117.4°   E5                          
E6      107.0°   -2.9°  -74.3°  -59.3° -174.1°   E6                   
E7       33.6° -138.1°  141.9°  118.0°   49.6°  135.9°   E7            
H8     -100.1°  133.9°   60.7°   85.7°  -39.6°  134.7°   84.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4cqha2 :   (ALA210)  (GLU320)   [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |automated matches |Deinococcus radiodurans [TaxId: 1299]
 d3s7qa2 :   (ALA210)  (GLU323)   [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Bacteriophytochrome BphP |Deinococcus radiodurans [TaxId: 1299]
 d4ijga2 :   (ALA210)  (GLU323)   [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Bacteriophytochrome BphP |Deinococcus radiodurans [TaxId: 243230]
 d3g6oa2 :   (PRO196)  (GLY309)   [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d4e04a2 :   (ALA206)  (GLU316)   [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
 d2oola1 :   (ALA219)  (ILE333)   [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Sensor protein PhyB2 |Rhodopseudomonas palustris [TaxId: 1076]
 d2oolb1 :   (ALA219)  (GLU330)   [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Sensor protein PhyB2 |Rhodopseudomonas palustris [TaxId: 1076]
 d2o9ba1 :   (ALA210)  (ALA321)   [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Bacteriophytochrome BphP |Deinococcus radiodurans [TaxId: 1299]
 d3ibra2 :   (PRO196)  (GLY309)   [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.110