Protein Concepts Dictionary

Tableau information

Concept source:  d1zjjb_  amino acid (a.a.) range (ALA167)(PRO251)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA167)  (ALA177) H1
	  (VAL180)  (GLY186) E2
	  (GLU190)  (PHE200) H3
	  (GLU204)  (GLY209) E4
	  (ARG211)  (PHE222) H5
	  (LYS225)  (LEU230) E6
	  (SER235)  (LYS241) H7
	  (ASP247)  (PRO251) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2      160.5°   E2                                               
H3      129.0°  -32.5°   H3                                        
E4      -93.3°  106.0°  131.9°   E4                                 
H5       77.3°  -84.0°  -59.7° -168.3°   H5                          
E6     -114.5°   84.7°  112.3°  -21.3° -166.5°   E6                   
H7       26.7° -138.9° -115.8°  112.0°  -56.8°  131.8°   H7            
E8     -135.8°   61.1°   84.3°  -47.6°  143.7°  -28.9°  159.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2c4na1 :   (CYS156)  (PRO242)   [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |NagD |Escherichia coli [TaxId: 562]
 d2x4da_ :   (GLY170)  (ASP255)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ifta_ :   (GLY162)  (LYS247)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d1vjra_ :   (ALA162)  (LYS249)   [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |Hypothetical protein TM1742 |Thermotoga maritima [TaxId: 2336]
 d3epra_ :   (ALA162)  (ALA248)   [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |automated matches |Streptococcus agalactiae [TaxId: 216466]
 d2hx1a_ :   (ALA182)  (GLU277)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 985]
 d4bkma_ :   (THR202)  (GLU294)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1zjjb_ :   (ALA167)  (PRO251)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d1j0ca_ :   (ARG141)  (ASP257)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]
 d1zjja_ :   (ALA167)  (PRO251)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d4ig4a_ :   (GLY162)  (LYS247)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d4jdpa_ :   (GLY164)  (ASN254)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108,    c.79