Protein Concepts Dictionary

Tableau information

Concept source:  d1r6aa_  amino acid (a.a.) range (PRO154)(PRO254)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEHEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PRO154)  (LEU172) H1
	  (PHE178)  (LEU183) E2
	  (PRO188)  (LYS200) H3
	  (ALA204)  (LEU210) E4
	  (HIS216)  (SER222) E5
	  (ASN223)  (ASN227) E6
	  (ASN227)  (PHE243) H7
	  (LYS248)  (PRO254) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2      169.0°   E2                                               
H3       15.5° -172.4°   H3                                        
E4      117.3°  -68.1°  116.2°   E4                                 
E5      -10.5°  165.1°   13.8°  126.3°   E5                          
E6     -135.0°   43.6° -129.3°  106.4° -124.8°   E6                   
H7      141.1°  -46.1°  136.5°   24.5°  148.8°   81.9°   H7            
E8       28.0° -151.5°   36.1°  -90.8°   38.4°  162.8° -115.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2oy0a_ :   (SER153)  (GLU256)   [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |automated matches |West Nile virus [TaxId: 11082]
 d1r6aa_ :   (PRO154)  (PRO254)   [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 |Flavivirus (Dengue virus type 2) [TaxId: 12637]
 d3lkza_ :   (ALA154)  (ASN259)   [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |automated matches |West Nile virus [TaxId: 11082]
 d2p1da_ :   (PRO154)  (PRO254)   [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 |Flavivirus (Dengue virus type 2) [TaxId: 12637]
 d2p41a_ :   (PRO154)  (GLY259)   [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 |Flavivirus (Dengue virus type 2) [TaxId: 12637]
 d1l9ka_ :   (THR155)  (PRO254)   [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 |Flavivirus (Dengue virus type 2) [TaxId: 12637]
 d2p3oa_ :   (THR161)  (PRO254)   [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 |Flavivirus (Dengue virus type 2) [TaxId: 12637]
 d3evaa_ :   (SER153)  (ALA255)   [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Yellow fever virus [TaxId: 11090]
 d2p40a_ :   (THR155)  (PRO254)   [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 |Flavivirus (Dengue virus type 2) [TaxId: 12637]
 d2p3la_ :   (PRO154)  (GLY259)   [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 |Flavivirus (Dengue virus type 2) [TaxId: 12637]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.66