Protein Concepts Dictionary

Tableau information

Concept source:  d2v65a2  amino acid (a.a.) range (LEU167)(ASN264)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEEHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU167)  (LEU180) H1
	  (CYS187)  (GLY193) E2
	  (SER198)  (VAL202) E3
	  (SER209)  (ASN213) H4
	  (ASN213)  (THR218) H5
	  (ASN224)  (GLY235) H6
	  (GLY235)  (GLY244) H7
	  (TRP248)  (ASN264) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2      145.5°   E2                                               
E3      -56.5°  141.7°   E3                                        
H4       47.9°  -97.8°  -90.3°   H4                                 
H5      132.3°  -32.4° -171.2°   97.0°   H5                          
H6      133.8°  -65.6°  128.2°  136.8°  -47.2°   H6                   
H7       88.1°  -94.1°  122.1°   97.1°   62.0°  -48.5°   H7            
H8      114.4°  -92.1°   57.9° -135.2° -113.3°  -86.9° -125.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4m1qb2 :   (THR147)  (ASN250)   [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Bacillus selenitireducens [TaxId: 439292]
 d3h3fa2 :   (CYS162)  (ASN265)   [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
 d1t2fa2 :   (LEU165)  (ASN266)   [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
 d1v6aa2 :   (THR163)  (ASN266)   [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Carp (Cyprinus carpio) [TaxId: 7962]
 d4ojna2 :   (LEU165)  (ASN266)   [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Human (Homo sapiens), muscle isoform (M chain) [TaxId: 9606]
 d2v65a2 :   (LEU167)  (ASN264)   [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Champsocephalus gunnari [TaxId: 52237]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.162