Protein Concepts Dictionary

Tableau information

Concept source:  d1rpnc_  amino acid (a.a.) range (ALA223)(GLU323)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEEHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA223)  (GLN236) H1
	  (ASP240)  (THR246) E2
	  (GLY247)  (THR251) E3
	  (VAL252)  (GLY264) H4
	  (LEU271)  (PRO275) E5
	  (ASP284)  (PRO290) E6
	  (PRO290)  (GLY298) H7
	  (SER304)  (GLU323) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2      162.7°   E2                                               
E3     -147.6°   48.7°   E3                                        
H4      126.1°   49.4°   79.2°   H4                                 
E5      -61.5° -131.8°  -86.7°  152.0°   E5                          
E6       49.1° -116.5°  161.5°   82.3°  110.6°   E6                   
H7       58.8° -112.7°  141.7°  -67.3°  114.4°  -24.6°   H7            
H8      119.4°  -73.9°  -53.2°  -57.3°   94.9°  116.3°   91.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2pzma_ :   (MET201)  (TYR296)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
 d1kerb_ :   (THR230)  (ASN325)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-glucose 4,6-dehydratase (RmlB) |Streptococcus suis, serotype 2 [TaxId: 1307]
 d2pk3a_ :   (VAL214)  (ALA309)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Aneurinibacillus thermoaerophilus [TaxId: 143495]
 d2x6ta_ :   (VAL214)  (ASN307)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Escherichia coli [TaxId: 562]
 d2pzmb_ :   (MET201)  (TYR296)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
 d1kepb_ :   (THR230)  (ASN325)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-glucose 4,6-dehydratase (RmlB) |Streptococcus suis, serotype 2 [TaxId: 1307]
 d2x6tg_ :   (VAL214)  (ASN307)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2