Protein Concepts Dictionary

Tableau information

Concept source:  d1i3kb_  amino acid (a.a.) range (MET209)(VAL296)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEEHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (MET209)  (GLY218) H1
	  (GLU221)  (GLY227) E2
	  (THR236)  (VAL244) E3
	  (VAL244)  (LEU258) H4
	  (CYS264)  (ASN268) E5
	  (GLY272)  (SER276) E6
	  (SER276)  (ALA287) H7
	  (LYS290)  (VAL296) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2     -148.3°   E2                                               
E3      -89.8°  118.0°   E3                                        
H4     -150.7°   59.2°   60.9°   H4                                 
E5       38.3° -110.2°  120.3°  159.2°   E5                          
E6       47.1° -111.3°  130.0° -155.1°   42.5°   E6                   
H7      -40.8°  156.1°   49.8°  110.2°   71.9°   86.6°   H7            
E8      123.6°  -41.6°  140.1°   83.7°  -99.4°  -76.6°  161.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1hzja_ :   (MET209)  (VAL296)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d1sb9a_ :   (ALA209)  (ARG291)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |UDP-N-acetylglucosamine 4-epimerase WbpP |Pseudomonas aeruginosa [TaxId: 287]
 d1i3ka_ :   (MET209)  (VAL296)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d1lrka_ :   (LEU200)  (PRO290)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Escherichia coli [TaxId: 562]
 d1ek5a_ :   (LEU208)  (VAL296)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d1i3kb_ :   (MET209)  (VAL296)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d1ek6b_ :   (MET209)  (VAL296)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d1i24a_ :   (LEU240)  (THR322)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sulfolipid biosynthesis protein SQD1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1qrra_ :   (LEU240)  (THR322)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sulfolipid biosynthesis protein SQD1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1i2ba_ :   (LEU240)  (THR322)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sulfolipid biosynthesis protein SQD1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2