Protein Concepts Dictionary

Tableau information

Concept source:  d1kepa_  amino acid (a.a.) range (SER159)(ALA254)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEEHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER159)  (GLY180) H1
	  (LYS182)  (CYS188) E2
	  (SER189)  (GLY193) E3
	  (PHE201)  (GLY212) H4
	  (GLY212)  (TYR218) E5
	  (LYS222)  (THR230) E6
	  (THR230)  (GLY244) H7
	  (GLU248)  (ALA254) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2     -154.8°   E2                                               
E3      113.5°   73.9°   E3                                        
H4      143.5°   48.5°  -30.1°   H4                                 
E5      -63.1° -108.0° -175.7° -153.4°   E5                          
E6       51.4°  128.4°  -62.1°  -92.2°  114.3°   E6                   
H7      -15.6°  157.7° -124.9° -153.1°   52.4°   64.2°   H7            
E8      143.4°  -25.5°   51.4°   34.0° -129.4°  103.0°  158.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1sb8a_ :   (SER164)  (ALA264)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |UDP-N-acetylglucosamine 4-epimerase WbpP |Pseudomonas aeruginosa [TaxId: 287]
 d2z1ma_ :   (SER149)  (THR247)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Aquifex aeolicus [TaxId: 224324]
 d1orra_ :   (SER163)  (GLY268)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |CDP-tyvelose-2-epimerase |Salmonella typhi [TaxId: 90370]
 d1r66a_ :   (SER149)  (GLY244)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-glucose 4,6-dehydratase (RmlB) |Streptomyces venezuelae [TaxId: 54571]
 d1vl0a_ :   (SER123)  (CYS208)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |DTDP-4-dehydrorhamnose reductase RfbD |Clostridium acetobutylicum [TaxId: 1488]
 d4bl5b_ :   (TYR143)  (SER243)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3enkb_ :   (ASN150)  (GLY265)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d4ndne_ :   (LEU147)  (GLY241)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2c20a_ :   (ASN140)  (ASN254)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
 d1vl0b_ :   (SER123)  (CYS208)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |DTDP-4-dehydrorhamnose reductase RfbD |Clostridium acetobutylicum [TaxId: 1488]
 d4glla_ :   (GLY226)  (GLY324)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2