Protein Concepts Dictionary

Tableau information

Concept source:  d3n1sm_  amino acid (a.a.) range (PHE7)(GLY107)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEEEHHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PHE7)   (ARG13) H1
	   (VAL20)   (ASP24) E2
	   (LEU25)   (ARG30) E3
	   (HIS39)   (PRO44) E4
	   (GLU59)   (MET65) H5
	   (ILE66)   (GLY77) H6
	   (LEU85)   (ASN90) E7
	  (HIS101)  (GLY107) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2      -85.0°   E2                                               
E3      103.9° -168.7°   E3                                        
E4      -82.3°   -7.7°  164.6°   E4                                 
H5       80.7°  161.3°  -30.0°  162.3°   H5                          
H6       70.3°  155.3°  -34.3°  151.6°  -15.9°   H6                   
E7     -139.6°  -71.4°   97.3°  -69.9°  127.1°  128.2°   E7            
E8       75.4°  148.1°  -43.0°  151.4°  -14.0°  -25.1°  138.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3n1se_ :     (PHE7)  (GLY107)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d3imic_ :     (THR4)  (ARG109)   [view usage] : d.13.1.1 |HIT-like |HIT-like |HIT (HINT, histidine triad) family of protein kinase-interacting proteins |automated matches |Bacillus anthracis [TaxId: 261594]
 d3n1ta_ :     (PHE7)  (GLY107)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d3n1sm_ :     (PHE7)  (GLY107)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d3imia_ :     (CYS8)  (ARG109)   [view usage] : d.13.1.1 |HIT-like |HIT-like |HIT (HINT, histidine triad) family of protein kinase-interacting proteins |automated matches |Bacillus anthracis [TaxId: 261594]
 d3n1te_ :     (PHE7)  (GLY107)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d3n1tb_ :     (PHE7)  (GLY107)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d1vlrb1 :   (ILE172)  (ALA281)   [view usage] : d.13.1.3 |HIT-like |HIT-like |mRNA decapping enzyme DcpS C-terminal domain |mRNA decapping enzyme DcpS C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
 d3n1sj_ :     (PHE7)  (GLY107)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d3n1tf_ :     (PHE7)  (GLY107)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.13