Protein Concepts Dictionary

Tableau information

Concept source:  d1ux1b_  amino acid (a.a.) range (ARG3)(ASN107)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEEEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ARG3)   (ARG14) H1
	   (PHE24)   (LYS33) E2
	   (LYS36)   (ALA46) E3
	   (MET50)   (ALA54) E4
	   (ALA54)   (GLY66) H5
	   (MET72)   (ASP78) E6
	   (CYS86)   (LEU96) H7
	  (VAL101)  (ASN107) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2      139.2°   E2                                               
E3      -29.5°  152.1°   E3                                        
E4     -144.6°   60.9° -146.3°   E4                                 
H5      104.8°  -34.6°  125.8°  -86.4°   H5                          
E6      -47.7°  167.5°  -40.1°  107.6°  147.6°   E6                   
H7      130.1°   -9.2°  146.0°  -67.7°   25.4°  167.8°   H7            
E8      -58.3°  150.9°  -56.4°   92.5°  143.0°  -16.7°  152.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4eg2a1 :    (GLU48)  (PRO150)   [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
 d1ux1b_ :     (ARG3)  (ASN107)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |mono-domain cytidine deaminase |Bacillus subtilis [TaxId: 1423]
 d1ux1a_ :     (ARG3)  (ASN107)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |mono-domain cytidine deaminase |Bacillus subtilis [TaxId: 1423]
 d4eg2c1 :    (GLU48)  (PRO150)   [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
 d3mpzb_ :     (TRP3)  (HIS105)   [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d1uwza_ :     (ASN2)  (ASN107)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |mono-domain cytidine deaminase |Bacillus subtilis [TaxId: 1423]
 d3mpza_ :     (TRP3)  (HIS105)   [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d4f3wa_ :     (TRP6)  (LEU109)   [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
 d1zabb_ :    (GLU11)  (THR118)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4f3wb_ :     (ASP5)  (LEU109)   [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.97