Protein Concepts Dictionary

Tableau information

Concept source:  d2zjub_  amino acid (a.a.) range (ASP2)(ASN90)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP2)   (THR13) H1
	   (ASP24)   (PHE35) E2
	   (LEU39)   (GLU43) E3
	   (ASN46)   (VAL50) E4
	   (PHE52)   (THR62) E5
	   (THR62)   (SER68) E6
	   (ASP72)   (PRO77) E7
	   (PRO84)   (ASN90) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
E2     -124.9°   E2                                               
E3       39.9°  -89.8°   E3                                        
E4     -139.4°   94.8° -168.2°   E4                                 
E5       76.8°  158.2°  111.3°  -63.5°   E5                          
E6      152.7°   78.0° -141.6°   30.7°  -81.9°   E6                   
E7      -63.0°  -76.2°   63.4° -128.2°  117.3°  143.6°   E7            
E8      -76.0°  -50.0°   40.3°  144.5°  151.6° -120.9°  -55.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1uw6a_ :     (ASP2)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Acetylcholine binding protein (ACHBP) |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d2zjub_ :     (ASP2)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d3u8ka_ :     (ASP2)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d1i9ba_ :     (ASP2)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Acetylcholine binding protein (ACHBP) |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d1uw6b_ :     (ASP2)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Acetylcholine binding protein (ACHBP) |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d2zjvb_ :     (ARG3)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d4qaad_ :    (ASP-1)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d2zjua_ :     (ASP2)   (THR99)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d2zjuc_ :     (ASP2)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d1uv6a_ :     (ASP2)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Acetylcholine binding protein (ACHBP) |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d1ux2a_ :     (ASP2)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Acetylcholine binding protein (ACHBP) |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
 d2zjvc_ :     (ASP2)   (ASN90)   [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.96