Protein Concepts Dictionary

Tableau information

Concept source:  d3w9va_  amino acid (a.a.) range (ASP1)(ALA74)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EHHHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP1)    (ALA7) E1
	    (ALA7)   (GLN11) H2
	   (GLN11)   (THR16) H3
	   (THR16)   (THR21) H4
	   (PRO26)   (VAL30) E5
	   (SER32)   (ASN42) H6
	   (HIS56)   (ASP61) E7
	   (THR65)   (ALA74) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
H2     -111.8°   H2                                               
H3      151.3°  -41.8°   H3                                        
H4      120.9°  118.8°  -78.7°   H4                                 
E5      -34.2° -140.2° -173.0°  100.7°   E5                          
H6     -142.3°  105.2°   63.7°  -26.2°  112.9°   H6                   
E7      -17.8°   97.5°  134.1°  125.2°  -51.7° -150.9°   E7            
H8      159.4°  -88.8°  -48.5°  -42.6°  126.9°   17.9° -167.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4f18a_ :  (ASP1001) (LYS1077)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
 d2v3qa1 :     (ASP1)   (ASP75)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |PstS-like phosphate-binding protein |Human (Homo sapiens) [TaxId: 9606]
 d4m1va_ :     (ASP1)   (ASP75)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Unidentified prokaryotic [TaxId: 2725]
 d4f1va_ :  (ASP1001) (LYS1077)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 216595]
 d3w9va_ :     (ASP1)   (ALA74)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Unidentified prokaryotic [TaxId: 2725]
 d2q9ta_ :     (ASP1)   (ALA76)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94