Protein Concepts Dictionary

Tableau information

Concept source:  d2gqda2  amino acid (a.a.) range (ALA256)(ILE367)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA256)  (TYR268) E1
	  (GLY277)  (GLY292) H2
	  (GLU294)  (GLN299) H3
	  (GLN299)  (HIS304) E4
	  (THR308)  (GLY324) H5
	  (LEU330)  (LYS336) E6
	  (GLY347)  (LYS359) H7
	  (SER361)  (ILE367) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
H2      150.3°   H2                                               
H3     -120.0°   87.9°   H3                                        
E4      -45.4°  137.7°   85.6°   E4                                 
H5      118.9°  -42.1° -118.1°  153.9°   H5                          
E6      -74.3°  116.6°   60.6°  -29.2°  156.2°   E6                   
H7      141.9°  -47.7°   77.9°  162.7°  -43.3°  137.3°   H7            
E8      -36.8°  170.5°  -83.7°   37.2° -147.1°   55.0°  133.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1j3na2 :   (VAL256)  (ILE364)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Thermus thermophilus [TaxId: 274]
 d2gqda2 :   (ALA256)  (ILE367)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Staphylococcus aureus [TaxId: 1280]
 d4r8ea2 :   (TYR254)  (ILE366)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
 d3o04a2 :   (GLY259)  (ILE366)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
 d4b7va2 :   (TYR255)  (ILE367)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d1b3na2 :   (GLY259)  (ILE366)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Escherichia coli [TaxId: 562]
 d4ewga2 :   (VAL258)  (THR360)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
 d4jb6a2 :   (TYR255)  (ILE367)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.95