Protein Concepts Dictionary

Tableau information

Concept source:  d2ed3a_  amino acid (a.a.) range (MET1)(PRO85)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (MET1)    (GLY9) E1
	   (ASP12)   (THR17) H2
	   (LEU21)   (CYS27) H3
	   (ASP28)   (TYR35) E4
	   (THR43)   (ILE51) H5
	   (GLU54)   (SER59) E6
	   (PHE67)   (ASN78) H7
	   (ASP79)   (PRO85) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
H2      123.4°   H2                                               
H3     -136.5°  100.1°   H3                                        
E4      -42.4°  116.7° -119.4°   E4                                 
H5      127.6°  -41.7°  -84.6°  153.3°   H5                          
E6      -75.5°   95.6°  101.6°  -33.6°  136.9°   E6                   
H7      118.2°  -55.6°   85.5° -155.0°  -15.0° -151.2°   H7            
E8      -21.2°  122.5° -130.6°  -21.2°  143.8°  -54.5° -137.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2ed3a_ :     (MET1)   (PRO85)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2owfa_ :     (MET1)   (PRO85)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2huta_ :     (MET1)   (PRO85)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2cbfa_ :    (LYS22)  (THR101)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Cobalt precorrin-4 methyltransferase CbiF |Bacillus megaterium [TaxId: 1404]
 d1cbfa_ :    (LYS22)  (THR101)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Cobalt precorrin-4 methyltransferase CbiF |Bacillus megaterium [TaxId: 1404]
 d2ejja_ :     (MET1)   (PRO85)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2enia_ :     (MET1)   (PRO85)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.90