Protein Concepts Dictionary

Tableau information

Concept source:  d3km6b1  amino acid (a.a.) range (PRO2)(LEU76)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EHEHHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PRO2)    (TYR7) E1
	   (ALA15)   (GLY25) H2
	   (LYS29)   (THR34) E3
	   (THR34)   (GLU40) H4
	   (GLY41)   (SER47) H5
	   (PRO53)   (GLY58) E6
	   (ASP59)   (GLN64) E7
	   (GLN64)   (LEU76) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
H2     -153.6°   H2                                               
E3      -18.7° -159.6°   E3                                        
H4      -88.6°  117.7°  -77.3°   H4                                 
H5     -116.1°   78.0° -122.2°  -66.0°   H5                          
E6      168.4°   34.1°  149.8°   85.0°   69.9°   E6                   
E7      -32.8°  132.6°  -50.7°  -98.6°  -91.7°  158.1°   E7            
H8     -157.5°   17.5° -174.9°  107.8°   60.5°   33.9°  126.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2wb9a1 :     (HIS5)   (PHE82)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Fasciola hepatica [TaxId: 6192]
 d10gsa2 :     (PRO2)   (LEU76)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Human (Homo sapiens) [TaxId: 9606]
 d3hjma1 :     (PRO2)   (THR75)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Human (Homo sapiens) [TaxId: 9606]
 d3km6b1 :     (PRO2)   (LEU76)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2j9ha1 :     (PRO3)   (THR76)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3km6a1 :     (PRO2)   (LEU76)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3vpqa1 :     (ASN3)   (TYR75)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Silkworm (Bombyx mori) [TaxId: 7091]
 d1tu7a2 :     (SER2)   (TYR74)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Onchocerca volvulus [TaxId: 6282]
 d17gsa2 :     (PRO2)   (THR75)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Human (Homo sapiens) [TaxId: 9606]
 d17gsb2 :     (PRO2)   (THR75)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Human (Homo sapiens) [TaxId: 9606]
 d2hnlb1 :    (LYS27)   (PHE99)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Onchocerca volvulus [TaxId: 6282]
 d4ec0a1 :     (ASN3)   (LYS73)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d13gsa2 :     (PRO2)   (THR75)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Human (Homo sapiens) [TaxId: 9606]
 d2hnla1 :    (LYS27)   (PHE99)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Onchocerca volvulus [TaxId: 6282]
 d4ec0b1 :  (ASN1003) (LYS1073)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d22gsa2 :     (PRO2)   (LEU76)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Human (Homo sapiens) [TaxId: 9606]
 d1aqva2 :     (PRO2)   (LEU76)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.47