Protein Concepts Dictionary

Tableau information

Concept source:  d3pbsa1  amino acid (a.a.) range (ARG62)(GLU149)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEHHHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ARG62)   (ASP67) E1
	   (LEU73)   (ALA84) E2
	   (PRO86)   (ALA92) H3
	   (ALA92)  (GLY104) H4
	  (LYS108)  (ALA118) H5
	  (GLU121)  (VAL126) E6
	  (THR130)  (LEU140) H7
	  (GLY144)  (GLU149) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2      153.0°   E2                                               
H3     -105.2°   53.9°   H3                                        
H4        6.4° -157.0° -111.5°   H4                                 
H5      129.8°  -73.5° -125.0°  123.5°   H5                          
E6      -23.4°  134.1°   82.3°   29.8°  152.2°   E6                   
H7      156.7°   11.2°   51.9°  162.5°  -73.3°  134.2°   H7            
E8      -35.3°  171.7° -132.0°   31.1°   99.0°  -53.6° -163.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3pboa1 :    (ILE58)  (GLU149)   [view usage] : d.175.1.0 |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d4kqqa1 :    (GLY63)  (ALA157)   [view usage] : d.175.1.0 |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3oc2a1 :    (GLY63)  (GLU149)   [view usage] : d.175.1.0 |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3pbra1 :    (ARG62)  (GLU149)   [view usage] : d.175.1.0 |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3pbsa1 :    (ARG62)  (GLU149)   [view usage] : d.175.1.0 |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d4kqqb1 :    (ILE58)  (ALA157)   [view usage] : d.175.1.0 |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.175