Protein Concepts Dictionary

Tableau information

Concept source:  d1s9gb_  amino acid (a.a.) range (LEU325)(ASN418)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEHEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU325)  (LYS331) E1
	  (GLN336)  (TYR342) E2
	  (THR351)  (MET357) E3
	  (ASP364)  (GLY384) H4
	  (GLY384)  (LYS390) E5
	  (LYS395)  (TRP401) H6
	  (TRP401)  (TRP406) H7
	  (THR409)  (ASN418) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2      160.0°   E2                                               
E3      -43.7°  153.9°   E3                                        
H4      152.9°  -34.1°  138.5°   H4                                 
E5      -48.5°  114.2°  -78.9°  142.7°   E5                          
H6       96.9° -103.1°   57.9°  -81.1°  135.9°   H6                   
H7      101.3°  -93.2°   82.9°  -59.8°  148.4°  -41.0°   H7            
E8      -61.3°   98.8° -100.6°  119.4°  -26.0°  158.0°  140.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1bqnb_ :   (LEU325)  (THR419)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1hysb_ :   (LEU325)  (GLU415)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1uwbb_ :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1j5ob_ :   (LEU325)  (VAL417)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d4h4mb_ :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 [TaxId: 11678]
 d2qk9a_ :   (ASP138)  (HIS260)   [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1hnvb_ :   (ASP324)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1qe1b_ :   (LEU325)  (GLU415)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1bqmb_ :   (ILE326)  (THR419)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1sv5b_ :   (LEU325)  (THR419)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1hpzb_ :   (LEU325)  (THR419)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1s9gb_ :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1hnib_ :   (ILE326)  (THR419)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1ikxb_ :  (LEU1325) (ASN1418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d2be2b_ :   (LEU325)  (GLU413)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8,    c.55