Protein Concepts Dictionary

Tableau information

Concept source:  d2br2b1  amino acid (a.a.) range (SER30)(GLY154)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER30)   (GLY36) E1
	   (ASP42)   (GLY50) E2
	   (ALA54)   (GLY60) E3
	   (PRO66)   (LEU71) H4
	   (VAL76)   (HIS82) E5
	   (SER97)  (ALA114) H6
	  (ARG122)  (GLN133) E7
	  (GLY137)  (GLY154) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2      170.5°   E2                                               
E3      -25.7°  163.7°   E3                                        
H4     -126.7°   60.6° -105.1°   H4                                 
E5      132.8°  -38.0°  158.1°   96.0°   E5                          
H6      -69.1°  116.4°  -53.7°  -58.7°  139.3°   H6                   
E7      140.6°  -29.9°  166.0°   85.0°  -11.8°  128.6°   E7            
H8      -33.0°  147.5°  -35.1°  -99.1°  136.1°  -41.0°  134.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2br2v1 :    (SER30)  (ALA153)   [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Sulfolobus solfataricus [TaxId: 2287]
 d3m7nd1 :    (PRO28)  (GLY152)   [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
 d2br2b1 :    (SER30)  (GLY154)   [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Sulfolobus solfataricus [TaxId: 2287]
 d2br2d1 :    (SER30)  (GLY154)   [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Sulfolobus solfataricus [TaxId: 2287]
 d2c39n1 :    (SER30)  (ALA153)   [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Sulfolobus solfataricus [TaxId: 2287]
 d2br2p1 :    (SER30)  (GLY154)   [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Sulfolobus solfataricus [TaxId: 2287]
 d2br2r1 :    (SER30)  (GLY154)   [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Sulfolobus solfataricus [TaxId: 2287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.14