Protein Concepts Dictionary

Tableau information

Concept source:  d3vcza_  amino acid (a.a.) range (THR2)(ARG128)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEHEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR2)    (ASP8) E1
	   (GLN19)   (LEU23) E2
	   (MET26)   (PRO34) E3
	   (ILE46)   (GLY65) H4
	   (VAL72)   (VAL78) E5
	   (PHE84)   (ASN99) H6
	  (ALA105)  (GLU110) E7
	  (ILE120)  (ARG128) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2      149.5°   E2                                               
E3      -33.0°  166.7°   E3                                        
H4      129.4°  -42.4°  151.0°   H4                                 
E5      -55.3°  151.7°  -22.5°  148.0°   E5                          
H6      100.6°  -55.3°  133.1°  -36.9°  152.9°   H6                   
E7      -61.3°  147.6°  -29.3°  140.8°   -8.0°  154.0°   E7            
E8      128.2°  -27.0°  161.2°  -26.9°  174.5°  -28.6°  166.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3lmea_ :    (SER28)  (PRO155)   [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
 d2ewck_ :     (THR3)  (LYS121)   [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Hypothetical protein SPy2060 |Streptococcus pyogenes [TaxId: 1314]
 d3lmei_ :    (SER28)  (PRO155)   [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
 d2ewcb_ :     (THR3)  (LYS121)   [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Hypothetical protein SPy2060 |Streptococcus pyogenes [TaxId: 1314]
 d3k0tc_ :     (LYS3)  (GLU126)   [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 323]
 d3vcza_ :     (THR2)  (ARG128)   [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Vibrio vulnificus [TaxId: 216895]
 d1j7ha_ :     (GLN4)  (LYS130)   [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Conserved 'hypothetical' protein YjgF |Haemophilus influenzae [TaxId: 727]
 d2b33a1 :     (LYS2)  (GLU126)   [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Putative protein synthesis inhibitor TM0215 |Thermotoga maritima [TaxId: 2336]
 d3m4sa_ :     (LYS3)  (LEU127)   [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
 d3mqwd_ :     (LYS3)  (LEU127)   [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
 d1nq3d_ :     (LEU4)  (PRO131)   [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |14.5 kda translational inhibitor protein, L-PSP |Goat (Capra hircus) [TaxId: 9925]
 d2ewcd_ :     (THR3)  (LYS121)   [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Hypothetical protein SPy2060 |Streptococcus pyogenes [TaxId: 1314]
 d1nq3a_ :     (LEU4)  (PRO131)   [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |14.5 kda translational inhibitor protein, L-PSP |Goat (Capra hircus) [TaxId: 9925]
 d3r0pc_ :     (THR2)  (ILE127)   [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |uncultured organism [TaxId: 155900]
 d2ewca1 :     (ILE4)  (LYS121)   [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Hypothetical protein SPy2060 |Streptococcus pyogenes [TaxId: 1314]
 d3r0pd_ :     (THR2)  (ILE127)   [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |uncultured organism [TaxId: 155900]
 d1xrgb_ :     (ILE3)  (LYS126)   [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Purine regulatory protein YabJ |Clostridium thermocellum [TaxId: 1515]
 d3lmec_ :    (SER28)  (ALA154)   [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.79