Protein Concepts Dictionary

Tableau information

Concept source:  d2f0na_  amino acid (a.a.) range (LYS6)(VAL114)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS6)   (PRO11) E1
	   (THR33)   (LEU38) E2
	   (LEU38)   (PRO42) E3
	   (TYR54)   (ALA69) H4
	   (LYS71)   (ASP77) E5
	   (GLY86)   (ASP95) E6
	   (VAL99)  (GLY107) H7
	  (LEU108)  (VAL114) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2     -141.0°   E2                                               
E3      -47.7°  105.8°   E3                                        
H4      -79.0°  109.8° -125.1°   H4                                 
E5      147.6°   64.0° -117.0°  115.8°   E5                          
E6      -80.7°  -70.1°   90.1°   65.5°  131.3°   E6                   
H7      -97.0°  -52.8°   53.2°  143.5°  -86.8°   78.1°   H7            
E8      134.2°  -84.7°  135.6°  -88.6°  -30.3° -133.1° -117.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ey9a_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d2f0qa_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d1snpa_ :    (THR22)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d1ez6a_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d1syca_ :     (LYS6)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d2f0na_ :     (LYS6)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d1eyaa_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d2f0ea_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d1syea_ :     (LYS6)  (TYR115)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d2f0ka_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d2f0sa_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d2f0va_ :     (LYS6)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d1eyca_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d2f0ga_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d2f0ha_ :     (LEU7)  (VAL114)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.40