Tableau information
Concept source: d1qvcb_ amino acid (a.a.) range (GLY204)(VAL303)
nSSEs in this Concept: 8
String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY204) (GLY212) E1
(PRO218) (PRO224) E2
(ALA228) (LYS243) E3
(GLU247) (GLY261) E4
(GLY261) (LEU271) H5
(VAL277) (GLY281) E6
(LEU283) (THR289) E7
(GLY293) (VAL303) E8
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -131.3° E2
E3 68.9° 159.6° E3
E4 -121.5° -13.3° 163.7° E4
H5 8.9° -138.3° 62.1° -129.5° H5
E6 170.4° 48.9° -111.7° 60.3° -163.9° E6
E7 94.1° 71.8° -113.3° 79.8° -91.9° 76.8° E7
E8 -80.4° -89.2° 93.0° -77.7° 86.7° 108.9° 149.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1lyla1 : (SER62) (THR140) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysU [TaxId: 562]
d1bbwa1 : (VAL67) (THR140) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysS [TaxId: 562]
d4damd_ : (GLU3) (VAL101) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d4dame_ : (GLU3) (VAL101) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1b8aa1 : (VAL19) (GLU93) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Aspartyl-tRNA synthetase (AspRS) |Pyrococcus kodakaraensis [TaxId: 311400]
d4damf_ : (GLU3) (ALA100) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d4dama_ : (GLU3) (ALA100) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1wyda1 : (VAL19) (GLU90) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d3nela1 : (VAL19) (GLU93) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 311400]
d4damk_ : (GLU3) (ALA100) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1qvcb_ : (GLY204) (VAL303) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |ssDNA-binding protein |Escherichia coli [TaxId: 562]
d2vw9a_ : (MET1001) (ASP1100) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1qvcd_ : (ASN606) (VAL703) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |ssDNA-binding protein |Escherichia coli [TaxId: 562]
d1ixra2 : (ARG3) (PHE62) [view usage] : b.40.4.2 |OB-fold |Nucleic acid-binding proteins |DNA helicase RuvA subunit, N-terminal domain |DNA helicase RuvA subunit, N-terminal domain |Thermus thermophilus [TaxId: 274]
d2vw9b_ : (MET2001) (SER2101) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.40