Protein Concepts Dictionary

Tableau information

Concept source:  d1l6za2  amino acid (a.a.) range (GLN112)(ASP197)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLN112)  (THR118) E1
	  (ASP126)  (CYS132) E2
	  (ALA139)  (PHE145) E3
	  (ARG155)  (SER159) E4
	  (SER163)  (PRO169) E5
	  (LYS171)  (GLU177) H6
	  (GLU177)  (SER183) E7
	  (SER187)  (ASP197) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2      160.9°   E2                                               
E3      -54.5°  136.7°   E3                                        
E4      129.4°  -33.1°  157.5°   E4                                 
E5      -33.0°  165.1°  -31.7°  161.8°   E5                          
H6     -137.0°   32.5°  112.2°  -47.8° -143.1°   H6                   
E7      142.9°  -34.4°  157.2°  -35.7°  148.5°   66.2°   E7            
E8      -20.5°  157.4°  -36.3°  139.8°  -27.5° -125.0°  163.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3r4da2 :   (PRO113)  (ILE198)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2b4cc2 :    (PHE98)  (VAL175)   [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |CD4 C2-set domains |Human (Homo sapiens) [TaxId: 9606]
 d1iray1 :     (LYS4)   (LYS88)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Type-1 interleukin-1 receptor |Human (Homo sapiens) [TaxId: 9606]
 d3qp3c_ :     (ALA8)  (GLY100)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Titin |Human (Homo sapiens), different modules [TaxId: 9606]
 d1l6za2 :   (GLN112)  (ASP197)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
 d2otpb1 :     (LYS5)   (VAL93)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ll9a2 :   (ASP104)  (LEU197)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3wjjc2 :    (LEU90)  (THR168)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ovza2 :   (GLY103)  (ALA196)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ig alpha Fc receptor, FCARI (CD89) |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1