Protein Concepts Dictionary

Tableau information

Concept source:  d3wa0c3  amino acid (a.a.) range (GLY218)(LYS312)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY218)  (LYS227) E1
	  (GLU231)  (ASP237) E2
	  (GLY240)  (ASP245) E3
	  (LYS253)  (PRO257) E4
	  (ASN263)  (ASP268) E5
	  (LYS269)  (PRO275) E6
	  (VAL282)  (SER288) E7
	  (LEU290)  (LYS312) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2      146.6°   E2                                               
E3      -57.3°  155.2°   E3                                        
E4      119.4°  -29.4°  173.6°   E4                                 
E5       61.6° -132.7°   54.4° -119.5°   E5                          
E6     -107.5°   57.7° -118.6°   67.1°  168.8°   E6                   
E7       94.0° -105.7°   69.5° -106.2°  -32.4°  158.1°   E7            
H8     -126.7°   37.2°  133.7°  -52.7° -169.8°   21.1°  139.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3u8za2 :   (GLY218)  (LYS312)   [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2d2qa2 :   (GLY202)  (ARG295)   [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3wa0a3 :   (GLY218)  (LYS312)   [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3wa0c3 :   (GLY218)  (LYS312)   [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1isna2 :   (GLY218)  (LYS312)   [view usage] : b.55.1.5 |PH domain-like barrel |PH domain-like |Third domain of FERM |Merlin |Mouse (Mus musculus) [TaxId: 10090]
 d1h4ra2 :   (GLY218)  (LYS312)   [view usage] : b.55.1.5 |PH domain-like barrel |PH domain-like |Third domain of FERM |Merlin |Human (Homo sapiens) [TaxId: 9606]
 d1j19a2 :   (GLY202)  (LYS296)   [view usage] : b.55.1.5 |PH domain-like barrel |PH domain-like |Third domain of FERM |Radixin |Mouse (Mus musculus) [TaxId: 10090]
 d3wa0f3 :   (GLY218)  (ARG311)   [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1gc6a2 :   (GLY202)  (ARG295)   [view usage] : b.55.1.5 |PH domain-like barrel |PH domain-like |Third domain of FERM |Radixin |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.55