Protein Concepts Dictionary

Tableau information

Concept source:  d2dlia1  amino acid (a.a.) range (ARG6)(ILE101)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ARG6)   (ALA12) E1
	   (ARG16)   (SER20) E2
	   (GLU22)   (ASP31) E3
	   (HIS36)   (GLU42) E4
	   (LYS46)   (ASP57) E5
	   (LYS61)   (GLY67) E6
	   (THR76)   (SER82) E7
	   (ASP95)  (ILE101) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2       41.9°   E2                                               
E3      156.5° -154.7°   E3                                        
E4      -61.0°  -66.4°  131.1°   E4                                 
E5      101.3°  121.8°  -56.9°  145.5°   E5                          
E6      -37.2°  -25.9°  165.9°  -40.9°  137.0°   E6                   
E7      136.4°  118.4°  -38.4°  160.3°  -50.8°  143.3°   E7            
E8       20.7°  -21.8°  170.9°  -58.0°  115.7°  -21.6°  133.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2a73a4 :   (PRO330)  (SER425)   [view usage] : b.1.29.5 |Immunoglobulin-like beta-sandwich |Macroglobulin |Complement C3 MG4-like |Complement C3 MG4 |Human (Homo sapiens) [TaxId: 9606]
 d1tdqa1 :     (ILE4)   (GLU93)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Tenascin |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1h9va2 :    (VAL89)  (GLN170)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fc gamma receptor ectodomain (CD32) |Human (Homo sapiens), IIa [TaxId: 9606]
 d1wfoa1 :    (ASP26)  (THR121)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Sidekick 2 |Human (Homo sapiens) [TaxId: 9606]
 d2dlia1 :     (ARG6)  (ILE101)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Killer cell inhibitory receptor |Human (Homo sapiens), 2dl2 [TaxId: 9606]
 d3wjjc1 :     (ALA5)   (SER85)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1xrub_ :   (LEU189)  (GLY261)   [view usage] : b.82.1.13 |Double-stranded beta-helix |RmlC-like cupins |KduI-like |5-keto-4-deoxyuronate isomerase KduI |Escherichia coli [TaxId: 562]
 d1b6ua1 :     (PRO8)  (ILE101)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Killer cell inhibitory receptor |Human (Homo sapiens), kir2dl3 [TaxId: 9606]
 d1f6aa2 :    (TRP87)  (SER162)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |IgE high affinity receptor alpha subunit |Human (Homo sapiens) [TaxId: 9606]
 d4gsxa2 :   (GLY304)  (GLY395)   [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus 1 [TaxId: 11059]
 d1x5ga1 :    (GLN16)  (ARG106)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Neogenin |Human (Homo sapiens) [TaxId: 9606]
 d2arwa_ :     (GLN5)  (THR103)   [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1olla1 :     (LYS4)   (VAL93)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ligand binding domain of NK receptor NKp46 |Human (Homo sapiens) [TaxId: 9606]
 d3d5of2 :    (VAL89)  (VAL171)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82,     b.1