Protein Concepts Dictionary

Tableau information

Concept source:  d1py4c_  amino acid (a.a.) range (LYS6)(LYS94)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS6)   (TYR10) E1
	   (SER20)   (GLY29) E2
	   (ASP34)   (LEU40) E3
	   (VAL49)   (LYS58) E4
	   (SER61)   (GLU69) E5
	   (GLU69)   (GLU74) E6
	   (LYS75)   (HIS84) E7
	   (PRO90)   (LYS94) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2      169.1°   E2                                               
E3      -22.8°  159.8°   E3                                        
E4      142.2°  -27.1°  150.1°   E4                                 
E5      -25.3°  165.3°  -21.2°  167.5°   E5                          
E6      -71.6°  106.7°   53.4° -105.5°   72.3°   E6                   
E7      158.5°  -24.4°  168.8°  -40.7°  149.3° -129.8°   E7            
E8      -25.3°  144.2°  -36.3°  118.6°  -49.1°  -63.3°  153.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2xfxb_ :     (LYS7)   (LYS94)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Cow (Bos taurus) [TaxId: 9913]
 d1bz9b_ :     (MET0)   (TYR94)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Mouse (Mus musculus) [TaxId: 10090]
 d2d4fa_ :     (LYS6)   (LYS94)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
 d1biib_ :   (GLN306)  (TYR394)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Mouse (Mus musculus) [TaxId: 10090]
 d4fxla_ :     (LYS6)   (LYS94)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
 d1py4c_ :     (LYS6)   (LYS94)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
 d2yxfa_ :     (LYS6)   (LYS94)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
 d1u58b_ :     (ILE1)   (TYR94)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Mouse (Mus musculus) [TaxId: 10090]
 d1kpvb_ :     (GLN6)   (TYR94)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1