Protein Concepts Dictionary

Tableau information

Concept source:  d1kjvb_  amino acid (a.a.) range (GLN6)(ARG97)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLN6)   (TYR10) E1
	   (LEU23)   (SER28) E2
	   (ILE35)   (LEU39) E3
	   (ILE49)   (LYS58) E4
	   (SER61)   (GLU69) E5
	   (GLU69)   (GLU74) E6
	   (THR75)   (HIS84) E7
	   (LYS91)   (ARG97) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2      160.4°   E2                                               
E3      -20.7°  161.5°   E3                                        
E4      136.8°  -24.7°  139.7°   E4                                 
E5      -23.4°  175.6°  -22.2°  159.6°   E5                          
E6      -76.7°  107.7°   57.2° -100.1°   73.8°   E6                   
E7      156.8°  -24.8°  173.6°  -46.6°  151.4° -126.5°   E7            
E8      -29.4°  132.6°  -36.9°  108.0°  -51.7°  -71.6°  146.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1z5lb_ :     (GLN6)   (TYR94)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Mouse (Mus musculus) [TaxId: 10090]
 d1kjvb_ :     (GLN6)   (ARG97)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2yf1b_ :     (LYS5)   (PRO96)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d3o81a_ :     (LYS6)   (PRO97)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d1akjb_ :     (LYS6)   (ARG97)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
 d1qo3b_ :     (GLN6)   (ARG97)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Mouse (Mus musculus) [TaxId: 10090]
 d3ciqa_ :     (LYS6)   (ARG97)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
 d4kdtd_ :     (LYS6)   (ARG97)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
 d1n5ab_ :     (GLN6)   (ASP98)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Mouse (Mus musculus) [TaxId: 10090]
 d3ciqg_ :     (LYS6)   (ARG97)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
 d3mzta_ :     (LYS6)   (ARG97)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1