Protein Concepts Dictionary

Tableau information

Concept source:  d3vgea1  amino acid (a.a.) range (GLU10)(GLN86)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLU10)   (TRP16) E1
	   (LYS21)   (VAL27) E2
	   (TYR33)   (GLU39) E3
	   (GLY41)   (LEU47) E4
	   (ARG55)   (ASP61) E5
	   (SER64)   (ASP68) E6
	   (ARG72)   (GLU76) E7
	   (PRO81)   (GLN86) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2      142.7°   E2                                               
E3      -52.3°  142.9°   E3                                        
E4      166.0°  -29.1°  141.7°   E4                                 
E5      -42.6°  159.1°  -57.9°  138.5°   E5                          
E6      114.8°  -67.1°   76.2°  -74.6°  133.1°   E6                   
E7      -83.3°   72.2° -135.5°   82.7°  -91.6° -131.2°   E7            
E8      133.4°  -61.8°   85.9°  -58.5°  133.7°   22.6°  133.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.8°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2fgza2 :   (GLY305)  (ASP395)   [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Pullulanase PulA |Klebsiella pneumoniae [TaxId: 573]
 d1z0na1 :    (PRO79)  (LYS157)   [view usage] : b.1.18.21 |Immunoglobulin-like beta-sandwich |E set domains |AMPK-beta glycogen binding domain-like |5'-AMP-activated protein kinase subunit beta-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1z0ma1 :    (PRO79)  (LYS157)   [view usage] : b.1.18.21 |Immunoglobulin-like beta-sandwich |E set domains |AMPK-beta glycogen binding domain-like |5'-AMP-activated protein kinase subunit beta-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2f15a1 :    (GLN75)  (LYS156)   [view usage] : b.1.18.21 |Immunoglobulin-like beta-sandwich |E set domains |AMPK-beta glycogen binding domain-like |5'-AMP-activated protein kinase subunit beta-2 |Human (Homo sapiens) [TaxId: 9606]
 d3vgba1 :    (VAL11)   (GLN86)   [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glycosyltrehalose trehalohydrolase, N-terminal domain N |Sulfolobus solfataricus, km1 [TaxId: 2287]
 d3vgda1 :    (GLU10)   (GLN86)   [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glycosyltrehalose trehalohydrolase, N-terminal domain N |Sulfolobus solfataricus, km1 [TaxId: 2287]
 d3vgea1 :    (GLU10)   (GLN86)   [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glycosyltrehalose trehalohydrolase, N-terminal domain N |Sulfolobus solfataricus, km1 [TaxId: 2287]
 d1m7xa1 :   (ARG139)  (CYS221)   [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |1,4-alpha-glucan branching enzyme, N-terminal domain N |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1