Protein Concepts Dictionary

Tableau information

Concept source:  d3mzgb2  amino acid (a.a.) range (VAL101)(GLN201)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (VAL101)  (LEU107) E1
	  (LEU109)  (GLU117) E2
	  (LEU123)  (SER128) E3
	  (TRP139)  (PRO150) E4
	  (ALA154)  (PHE160) E5
	  (THR165)  (SER171) E6
	  (GLN176)  (PRO186) E7
	  (TYR190)  (GLN201) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2       57.0°   E2                                               
E3      124.3°  142.2°   E3                                        
E4      -51.0°  -69.6°  145.0°   E4                                 
E5      106.1°   80.6°  -62.3°  149.3°   E5                          
E6      -64.9°  -53.3°  163.9°  -27.7°  130.9°   E6                   
E7      147.9°  120.9°  -34.3°  160.7°  -47.3°  143.5°   E7            
E8       11.8°  -51.1°  135.9°  -41.4°  112.3°  -53.2°  157.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1p9mc2 :   (GLN196)  (THR294)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-6 receptor alpha chain, domains 2 and 3 |Human (Homo sapiens) [TaxId: 9606]
 d1fg9c1 :    (VAL12)  (VAL104)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interferon-gamma receptor alpha chain |Human (Homo sapiens) [TaxId: 9606]
 d1j7vr1 :     (THR3)   (THR93)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-10 receptor 1, IL-10R1 |Human (Homo sapiens) [TaxId: 9606]
 d1jrhi_ :    (SER11)  (VAL104)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interferon-gamma receptor alpha chain |Human (Homo sapiens) [TaxId: 9606]
 d1x5ja1 :     (PRO8)  (THR104)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Neogenin |Human (Homo sapiens) [TaxId: 9606]
 d3nccb2 :   (VAL101)  (GLN201)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1bqub1 :     (GLY2)   (PHE96)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]
 d2b5ic1 :   (VAL130)  (TRP224)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor common gamma chain |Human (Homo sapiens) [TaxId: 9606]
 d2aewb2 :   (GLN130)  (LEU233)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1x5za1 :    (GLY16)  (ALA100)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Receptor-type tyrosine-protein phosphatase delta, PTPRD |Human (Homo sapiens) [TaxId: 9606]
 d3mzgb2 :   (VAL101)  (GLN201)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2erjc2 :   (VAL130)  (TRP224)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor common gamma chain |Human (Homo sapiens) [TaxId: 9606]
 d1owrm1 :   (GLU576)  (PRO677)   [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |T-cell transcription factor NFAT1 (NFATC2) |Human (Homo sapiens) [TaxId: 9606]
 d1i1ra2 :   (PRO103)  (PHE192)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1