Protein Concepts Dictionary

Tableau information

Concept source:  d2rjma2  amino acid (a.a.) range (PRO94)(LYS186)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO94)   (LYS99) E1
	  (PRO103)  (LYS108) E2
	  (GLU111)  (GLY121) E3
	  (GLU124)  (TYR130) E4
	  (LYS141)  (VAL147) E5
	  (ALA151)  (ASN157) E6
	  (GLY164)  (ALA173) E7
	  (SER176)  (LYS186) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                      
E2       52.4°   E2                                               
E3      136.4° -158.7°   E3                                        
E4      -58.2°  -51.7°  147.9°   E4                                 
E5      115.1°  143.1°  -24.3°  159.0°   E5                          
E6      -53.3°  -24.3°  169.8°  -27.7°  165.4°   E6                   
E7      139.6°  133.6°  -25.2°  162.3°  -30.2°  152.7°   E7            
E8       36.3°  -31.3°  168.9°  -28.0°  151.4°  -18.0°  164.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2b5ib2 :   (LEU104)  (ARG204)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-2 receptor beta chain |Human (Homo sapiens) [TaxId: 9606]
 d2wwmt_ :     (SER0)   (ARG97)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2edha_ :    (PRO19)  (ALA105)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2erjf1 :   (LEU104)  (HIS209)   [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-2 receptor beta chain |Human (Homo sapiens) [TaxId: 9606]
 d2rika2 :    (PRO94)  (LYS186)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
 d2yd5a1 :    (LYS32)  (VAL124)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2iepb1 :    (ALA27)  (LYS118)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3bn3b1 :     (TRP4)   (GLN87)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2wwkt_ :     (SER0)   (SER98)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1tlka_ :    (LYS41)  (MET135)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Telokin |Turkey (Meleagris gallopavo) [TaxId: 9103]
 d2y9rt_ :     (PRO4)   (SER98)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2yd2a1 :    (PRO32)  (THR123)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2yd1a1 :    (PRO35)  (ILE129)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d2e6pa_ :     (PRO8)   (ASP97)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2yd3a1 :    (PRO32)  (THR123)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2yd6a1 :    (PRO23)  (THR114)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2rjma2 :    (PRO94)  (LYS186)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1