Tableau information
Concept source: d1m5q1_ amino acid (a.a.) range (VAL24)(GLU77)
nSSEs in this Concept: 8
String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL24) (SER29) E1
(GLY31) (GLY36) E2
(HIS39) (ASN43) E3
(ASN46) (ASN51) E4
(ASN51) (LYS55) E5
(GLY57) (ASN61) E6
(ASN61) (MSE66) E7
(HIS72) (GLU77) E8
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 161.9° E2
E3 58.5° -117.5° E3
E4 -122.7° 63.2° -174.5° E4
E5 -48.1° 149.1° -83.7° 93.5° E5
E6 113.7° -50.3° 77.6° -105.7° 159.7° E6
E7 47.7° -130.5° -13.4° 163.9° 70.5° 90.4° E7
E8 154.3° -40.3° -140.1° 36.7° 108.9° -90.6° -145.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1n9ra_ : (ARG26) (ASN86) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Small nuclear ribonucleoprotein F, Smf |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1n9sd_ : (ARG26) (ASN86) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Small nuclear ribonucleoprotein F, Smf |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1m5qh_ : (VAL24) (GLU77) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Sm-Like archaeal protein Smap3 |Pyrobaculum aerophilum [TaxId: 13773]
d1m5q1_ : (VAL24) (GLU77) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Sm-Like archaeal protein Smap3 |Pyrobaculum aerophilum [TaxId: 13773]
d2vxfa_ : (SER10) (GLU79) [view usage] : b.38.1.5 |Sm-like fold |Sm-like ribonucleoproteins |LSM14 N-terminal domain-like |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d1n9sn_ : (ARG26) (GLU83) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Small nuclear ribonucleoprotein F, Smf |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1n9rb_ : (ARG26) (ASN86) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Small nuclear ribonucleoprotein F, Smf |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1n9sj_ : (ARG26) (ASN86) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Small nuclear ribonucleoprotein F, Smf |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4f7ug_ : (LEU5017) (GLU5074) [view usage] : b.38.1.0 |Sm-like fold |Sm-like ribonucleoproteins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4f7uj_ : (SER5018) (GLU5074) [view usage] : b.38.1.0 |Sm-like fold |Sm-like ribonucleoproteins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1n9sc_ : (ARG26) (ASN86) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Small nuclear ribonucleoprotein F, Smf |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1th7a1 : (VAL22) (LEU78) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Archaeal homoheptameric Sm protein |Sulfolobus solfataricus [TaxId: 2287]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.38