Protein Concepts Dictionary

Tableau information

Concept source:  d3zhwb_  amino acid (a.a.) range (THR10)(SER159)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR10)   (MET24) H1
	   (SER28)   (PRO44) H2
	   (PRO44)   (PHE50) H3
	   (ASN63)   (LYS86) H4
	   (ARG93)  (GLY108) H5
	  (GLU112)  (VAL129) H6
	  (SER134)  (SER159) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2      105.2°   H2                                        
H3      -61.3° -123.6°   H3                                 
H4     -151.9°  101.9°  108.6°   H4                          
H5       70.5°  -36.1°  112.1° -133.9°   H5                   
H6       71.0°  133.6°  -95.9°  -85.0°  110.8°   H6            
H7      -91.7°  -71.1°   56.2°  104.1°  -82.1°  152.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2oifg_ :    (MET25)  (LYS159)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Barley (Hordeum vulgare) [TaxId: 4513]
 d1jf3a_ :     (SER3)  (SER147)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Glycera globin |Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]
 d1bina_ :     (GLU5)  (LYS142)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Leghemoglobin |Soybean (Glycine max), isoform A [TaxId: 3847]
 d3zhwb_ :    (THR10)  (SER159)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Escherichia coli [TaxId: 562]
 d1cqxa1 :    (ALA14)  (GLN147)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Flavohemoglobin, N-terminal domain |Alcaligenes eutrophus [TaxId: 106590]
 d2ig3a_ :     (ASN7)  (MET120)   [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Campylobacter jejuni [TaxId: 197]
 d2gnvb_ :    (SER14)  (LYS162)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Non-symbiotic plant hemoglobin |Rice (Oryza sativa) [TaxId: 4530]
 d3pt8b_ :     (THR5)  (LEU152)   [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Clam (Lucina pectinata) [TaxId: 244486]
 d2gnwa_ :    (GLU15)  (LYS162)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Non-symbiotic plant hemoglobin |Rice (Oryza sativa) [TaxId: 4530]
 d3zhwa_ :    (VAL18)  (LEU158)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Escherichia coli [TaxId: 562]
 d1jwna_ :    (LYS23)  (LEU146)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin I |Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
 d3s1ia_ :    (LYS15)  (ALA132)   [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Methylacidiphilum infernorum [TaxId: 481448]
 d1or4b_ :    (ASP45)  (GLU178)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Heme-based aerotactic transducer HemAT, sensor domain |Bacillus subtilis [TaxId: 1423]
 d1x9fc_ :     (SER8)  (SER148)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) |Common earthworm (Lumbricus terrestris) [TaxId: 6398]
 d1tu9a_ :     (ASN2)  (SER132)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hypothetical protein PA3967 |Pseudomonas aeruginosa [TaxId: 287]
 d1d8ua_ :    (SER14)  (LYS162)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Non-symbiotic plant hemoglobin |Rice (Oryza sativa) [TaxId: 4530]
 d2gnva_ :    (GLU16)  (LYS162)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Non-symbiotic plant hemoglobin |Rice (Oryza sativa) [TaxId: 4530]
 d2oifc_ :    (LEU19)  (LYS159)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Barley (Hordeum vulgare) [TaxId: 4513]
 d4mpma_ :    (ARG14)  (ASP149)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Neuroglobin |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   a.1