Protein Concepts Dictionary

Tableau information

Concept source:  d3pvyb_  amino acid (a.a.) range (LEU53)(ASP171)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LEU53)   (GLY61) H1
	   (ASP64)   (ALA69) H2
	   (LEU80)   (GLN85) H3
	   (ASN89)  (GLU113) H4
	  (PRO117)  (PHE136) H5
	  (SER137)  (GLY147) H6
	  (THR148)  (ASP171) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2      108.6°   H2                                        
H3     -129.7°  -71.4°   H3                                 
H4       52.4°  140.2° -148.4°   H4                          
H5     -159.0°  -50.8°   46.4° -144.7°   H5                   
H6     -136.5°  -27.9°   57.9° -148.1°   23.3°   H6            
H7       17.3°  114.6°  146.3°  -37.5° -161.9° -140.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3pvtb_ :    (LEU53)  (THR166)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
 d1xmfc1 :   (SER172)  (LYS323)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]
 d2qcxa_ :    (HIS86)  (ARG214)   [view usage] : a.132.1.3 |Heme oxygenase-like |Heme oxygenase-like |TENA/THI-4 |Transcriptional activator TenA |Bacillus subtilis [TaxId: 1423]
 d1fyzc_ :   (GLN194)  (LEU342)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]
 d3pvyb_ :    (LEU53)  (ASP171)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
 d1fzic_ :   (GLN194)  (TRP324)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]
 d1fz5d_ :   (SER172)  (LEU342)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]
 d1yafc_ :    (PHE89)  (ARG214)   [view usage] : a.132.1.3 |Heme oxygenase-like |Heme oxygenase-like |TENA/THI-4 |Transcriptional activator TenA |Bacillus subtilis [TaxId: 1423]
 d3pvrb_ :    (LEU53)  (ASP171)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
 d3pwqk_ :    (LEU53)  (ASP171)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
 d3no6b_ :    (GLU84)  (ASN218)   [view usage] : a.132.1.0 |Heme oxygenase-like |Heme oxygenase-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
 d2a6ba1 :    (LEU75)  (ASP221)   [view usage] : a.132.1.3 |Heme oxygenase-like |Heme oxygenase-like |TENA/THI-4 |Putative transcriptional regulator SP0716 (SPr0628) |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d1fyzd_ :   (GLN194)  (LEU342)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.132,    a.25