Protein Concepts Dictionary

Tableau information

Concept source:  d1pqma_  amino acid (a.a.) range (PHE4)(LYS124)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PHE4)   (ASP10) H1
	   (LEU39)   (ALA49) H2
	   (THR59)   (ASN81) H3
	   (LYS85)   (LEU91) H4
	   (ALA93)  (MET106) H5
	  (GLY107)  (GLY113) H6
	  (THR115)  (LYS124) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2     -161.0°   H2                                        
H3      111.3°   87.6°   H3                                 
H4      115.7°  -57.8° -104.3°   H4                          
H5      -41.9°  133.3°  106.1° -147.9°   H5                   
H6       91.4° -103.8°  -43.8°   79.2°  117.0°   H6            
H7      143.1°  -36.8°  -82.8°   28.7° -167.7°  -75.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1l0ka_ :     (PHE4)  (SER117)   [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
 d209la_ :     (PHE4)  (TRP138)   [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
 d213la_ :     (PHE4)  (LYS124)   [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
 d218la_ :     (ILE3)  (LEU121)   [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
 d214la_ :     (ASN2)  (MET120)   [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
 d171la_ :     (ASN2)  (LYS124)   [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
 d3cdqa_ :     (PHE4)  (LYS124)   [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
 d173la_ :     (ASN2)  (LYS124)   [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.2