Protein Concepts Dictionary

Tableau information

Concept source:  d2ygsa_  amino acid (a.a.) range (ASP2)(LEU87)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP2)   (ARG13) H1
	   (ARG13)   (ASP19) H2
	   (TYR24)   (GLY33) H3
	   (THR36)   (ASN45) H4
	   (THR48)   (LYS63) H5
	   (ASN65)   (GLY79) H6
	   (LYS81)   (LEU87) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2      -53.7°   H2                                        
H3     -166.4° -114.0°   H3                                 
H4      -21.3°  -74.3°  165.5°   H4                          
H5     -168.2°  138.1°   24.8°  147.3°   H5                   
H6       40.4°   42.9°  136.6°  -57.6° -144.5°   H6            
H7      141.6° -159.4°  -48.6°  120.3°  -27.7° -156.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1cwwa_ :     (ASP2)   (LEU87)   [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |Apoptotic protease activating factor 1, APAF-1 |Human (Homo sapiens) [TaxId: 9606]
 d3ygsc_ :     (ASP2)   (LEU87)   [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |Apoptotic protease activating factor 1, APAF-1 |Human (Homo sapiens) [TaxId: 9606]
 d3ygsp_ :     (ASP3)   (ALA96)   [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |Procaspase 9 prodomain |Human (Homo sapiens) [TaxId: 9606]
 d1cy5a_ :     (ALA3)   (LEU87)   [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |Apoptotic protease activating factor 1, APAF-1 |Human (Homo sapiens) [TaxId: 9606]
 d4rhwe_ :     (GLU3)   (ALA95)   [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2p1ha_ :     (ASP4)   (LEU89)   [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2ygsa_ :     (ASP2)   (LEU87)   [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |Apoptotic protease activating factor 1, APAF-1 |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.77