Protein Concepts Dictionary

Tableau information

Concept source:  d4k1xa2  amino acid (a.a.) range (GLU164)(SER247)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLU164)  (ASP176) H1
	  (PRO177)  (VAL183) H2
	  (TYR189)  (ARG195) E3
	  (ARG203)  (GLY211) H4
	  (GLY211)  (LEU217) H5
	  (ASP227)  (GLY233) E6
	  (SER234)  (SER247) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2      -95.3°   H2                                        
E3     -165.1°   87.7°   E3                                 
H4      -61.4°  -36.1°  117.1°   H4                          
H5      -34.2° -108.3°  131.2°  -73.1°   H5                   
E6      137.7° -126.9°  -41.7° -158.7°  117.1°   E6            
H7      -58.5°   37.1°  122.0°    7.6°  -74.6°  163.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2bgia2 :   (GLU164)  (ASP240)   [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Rhodobacter capsulatus [TaxId: 1061]
 d3cb2a1 :    (VAL73)  (ASP159)   [view usage] : c.32.1.0 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4k1xa2 :   (GLU164)  (SER247)   [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Rhodobacter capsulatus [TaxId: 1061]
 d4pyna_ :   (ASN135)  (GLY201)   [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Catechol O-methyltransferase, COMT |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2qdxa2 :   (THR157)  (GLU227)   [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |Ferredoxin reductase (flavodoxin reductase) |Pseudomonas aeruginosa [TaxId: 287]
 d3u81a_ :    (PRO93)  (GLY158)   [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Catechol O-methyltransferase, COMT |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4b4da2 :   (TYR153)  (GLY237)   [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
 d2vnkb2 :   (GLU164)  (SER247)   [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Rhodobacter capsulatus [TaxId: 1061]
 d4pyka_ :   (PRO143)  (GLY208)   [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Catechol O-methyltransferase, COMT |Human (Homo sapiens) [TaxId: 9606]
 d1a8pa2 :   (TYR152)  (GLY236)   [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |Ferredoxin reductase (flavodoxin reductase) |Azotobacter vinelandii [TaxId: 354]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.66,    c.32,    c.25