Protein Concepts Dictionary

Tableau information

Concept source:  d2gmfb_  amino acid (a.a.) range (HIS15)(VAL116)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (HIS15)   (LEU28) H1
	   (THR32)   (GLU38) H2
	   (GLU38)   (VAL42) E3
	   (CYS54)   (LEU66) H4
	   (GLY68)   (CYS88) H5
	   (SER95)  (ILE100) E6
	  (THR102)  (VAL116) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2     -126.5°   H2                                        
E3     -155.4°  -35.6°   E3                                 
H4       37.0°  150.2°  167.6°   H4                          
H5     -158.8°  -36.0°    4.3° -163.8°   H5                   
E6       21.3° -147.5°  168.6°  -20.6°  172.2°   E6            
H7     -149.3°   70.7°   35.2° -137.5°   35.8°  137.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2gmfa_ :     (SER7)  (VAL116)   [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Granulocyte-macrophage colony-stimulating factor (GM-CSF) |Human (Homo sapiens) [TaxId: 9606]
 d1csga_ :     (SER7)  (VAL116)   [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Granulocyte-macrophage colony-stimulating factor (GM-CSF) |Human (Homo sapiens) [TaxId: 9606]
 d2gmfb_ :    (HIS15)  (VAL116)   [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Granulocyte-macrophage colony-stimulating factor (GM-CSF) |Human (Homo sapiens) [TaxId: 9606]
 d3cxeb1 :    (HIS15)  (VAL116)   [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Granulocyte-macrophage colony-stimulating factor (GM-CSF) |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.26