Protein Concepts Dictionary

Tableau information

Concept source:  d2vlob_  amino acid (a.a.) range (PHE50)(LYS134)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PHE50)   (ASP64) H1
	   (ASN72)   (GLY82) H2
	   (VAL98)  (HIS103) E3
	  (PRO106)  (GLY110) H4
	  (ASP115)  (ILE119) H5
	  (ILE119)  (THR123) E6
	  (THR123)  (LYS134) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2     -133.7°   H2                                        
E3      121.3°  -44.7°   E3                                 
H4      111.2°  -31.4°   27.6°   H4                          
H5      -71.9°  153.1°  136.8°  163.9°   H5                   
E6      -70.6°  147.8°  150.5°  177.9°  -14.8°   E6            
H7      140.5°  -64.8°   40.3°   65.7°  101.5°  112.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1emvb_ :    (PHE50)  (HIS131)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E9 |Escherichia coli [TaxId: 562]
 d2vlpb_ :    (PHE50)  (LYS134)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |automated matches |Escherichia coli [TaxId: 562]
 d2vlob_ :    (PHE50)  (LYS134)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |automated matches |Escherichia coli [TaxId: 562]
 d2gykf_ :    (PHE50)  (ARG132)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E9 |Escherichia coli [TaxId: 562]
 d2vlqb_ :    (PHE50)  (LYS134)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |automated matches |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.4