Protein Concepts Dictionary

Tableau information

Concept source:  d1w6fa_  amino acid (a.a.) range (GLY7)(GLY85)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY7)   (GLY13) H1
	   (ASP21)   (SER35) H2
	   (SER35)   (ASN40) E3
	   (ASN40)   (GLY46) H4
	   (SER53)   (ARG65) H5
	   (ARG65)   (TYR69) E6
	   (TYR69)   (GLY85) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2       63.5°   H2                                        
E3       95.0°  -58.3°   E3                                 
H4       96.5°  -44.4°   20.1°   H4                          
H5       37.9°   58.9°  113.9°  103.3°   H5                   
E6      -88.1° -100.2°  -52.1°  -72.1° -125.9°   E6            
H7     -121.4°  148.6°  140.9°  141.8° -104.3° -110.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3d9wc_ :    (LEU18)   (GLY97)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nocardia farcinica [TaxId: 37329]
 d4bgfc_ :     (LEU5)   (GLY85)   [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d2vfba_ :     (LEU5)   (GLY85)   [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium marinum [TaxId: 1781]
 d1gx3a_ :     (ASP4)   (GLY85)   [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Mycobacterium smegmatis [TaxId: 1772]
 d1w6fb_ :     (GLY7)   (GLY85)   [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Mycobacterium smegmatis [TaxId: 1772]
 d4b55a_ :     (ASP4)   (GLY85)   [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium marinum [TaxId: 1781]
 d4bgfa_ :     (LEU5)   (GLY85)   [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3d9wb_ :    (ASP17)   (GLY97)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nocardia farcinica [TaxId: 37329]
 d1w6fa_ :     (GLY7)   (GLY85)   [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Mycobacterium smegmatis [TaxId: 1772]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.3