Protein Concepts Dictionary

Tableau information

Concept source:  d2wj2a_  amino acid (a.a.) range (ALA487)(PRO574)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA487)  (TYR493) H1
	  (MET495)  (LEU500) H2
	  (PRO503)  (PRO508) E3
	  (THR513)  (TYR523) H4
	  (ASP529)  (LYS540) H5
	  (LEU545)  (LEU554) E6
	  (GLN557)  (PRO574) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2      -52.7°   H2                                        
E3      107.6°  159.4°   E3                                 
H4      125.6°   82.6° -117.4°   H4                          
H5      -80.3°  122.4°  -39.2° -153.5°   H5                   
E6      -51.1°   13.5°  157.0°   78.0°  128.4°   E6            
H7      103.8°  156.3°  -10.8°  114.7°  -45.2°  149.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2wj2b_ :   (ALA487)  (PRO574)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1mt5a_ :   (ALA487)  (MET572)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Fatty acid amide hydrolase (oleamide hydrolase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2wapa_ :   (THR488)  (MET572)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2wapb_ :   (THR488)  (THR573)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2vyaa_ :   (ALA487)  (PRO574)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2vyab_ :   (ALA487)  (PRO574)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.117