Protein Concepts Dictionary

Tableau information

Concept source:  d1xv8a2  amino acid (a.a.) range (ASN298)(VAL401)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASN298)  (GLY304) H1
	  (ALA318)  (HIS331) H2
	  (PHE335)  (SER341) E3
	  (ASP353)  (VAL358) H4
	  (GLU369)  (ASN373) E5
	  (THR376)  (ASN380) E6
	  (TRP388)  (VAL401) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2      142.5°   H2                                        
E3      -58.2° -159.3°   E3                                 
H4      155.9°  -61.1°   98.3°   H4                          
E5       72.2°  -95.6°   93.0° -106.6°   E5                   
E6      -73.0°  123.7°  -52.1°   97.7°  140.4°   E6            
H7      135.7°   -6.9° -166.1°  -68.0°  -93.4°  125.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1bvnp2 :   (ASN298)  (ASP402)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Pig (Sus scrofa) [TaxId: 9823]
 d1c8qa2 :   (ASN298)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
 d3vm5a1 :   (ASN298)  (VAL402)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Oryzias latipes [TaxId: 8090]
 d1z32x2 :   (ASN298)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1