Protein Concepts Dictionary

Tableau information

Concept source:  d1s5ka_  amino acid (a.a.) range (GLU12)(SER117)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HHEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLU12)   (TRP22) H1
	   (ASP28)   (GLN39) H2
	   (HIS42)   (ALA48) E3
	   (ILE55)   (SER61) E4
	   (VAL75)   (LEU84) E5
	   (GLY91)  (GLY108) H6
	  (GLU111)  (SER117) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
H2      117.9°   H2                                        
E3       92.9° -114.2°   E3                                 
E4      -82.1°   59.3°  167.4°   E4                          
E5       90.8° -136.6°  -26.7°  163.4°   E5                   
H6     -108.3°   42.5°  154.0°  -26.5°  157.8°   H6            
E7      -52.5°  170.4°  -68.6°  116.0°  -49.2°  136.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3dr6c_ :    (CYS11)  (GLU121)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Salmonella typhimurium [TaxId: 90371]
 d2ganb_ :    (LYS14)  (PHE147)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PH0736 |Pyrococcus horikoshii [TaxId: 53953]
 d4cava1 :   (ASN132)  (TYR248)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Aspergillus fumigatus [TaxId: 746128]
 d1xf8a2 :   (SER188)  (GLY290)   [view usage] : d.108.1.4 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |FemXAB nonribosomal peptidyltransferases |Peptidyltransferase FemX |Weissella viridescens [TaxId: 1629]
 d1n71a_ :    (ASN10)  (ASP115)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Aminoglycoside 6'-N-acetyltransferase |Enterococcus faecium [TaxId: 1352]
 d2vbqb_ :    (LEU11)  (SER117)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Aminoglycoside N-acetyltransferase AAC(6')-IY |Salmonella enterica [TaxId: 28901]
 d2veza_ :    (GLY61)  (ASP165)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Aspergillus fumigatus [TaxId: 5085]
 d1y7ra1 :    (THR10)  (ILE105)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein SA2161 |Staphylococcus aureus [TaxId: 1280]
 d1b87a_ :    (PRO11)  (ASP115)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Aminoglycoside 6'-N-acetyltransferase |Enterococcus faecium [TaxId: 1352]
 d1n71b_ :    (PRO11)  (ASP115)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Aminoglycoside 6'-N-acetyltransferase |Enterococcus faecium [TaxId: 1352]
 d3t90a_ :    (GLY18)  (ASP123)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d2fsra1 :    (ALA19)  (SER132)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Probable acetyltranferase Atu2435 |Agrobacterium tumefaciens [TaxId: 358]
 d1rxta1 :    (ARG89)  (TYR204)   [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Human (Homo sapiens) [TaxId: 9606]
 d1vkca_ :    (ILE12)  (GLU125)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Putative acetyltransferase PF0028 |Pyrococcus furiosus [TaxId: 2261]
 d2gana1 :    (VAL13)  (PHE147)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PH0736 |Pyrococcus horikoshii [TaxId: 53953]
 d4ag7b_ :    (GLY35)  (CYS141)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
 d1vhsa_ :    (LEU11)  (ILE120)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Putative phosphinothricin acetyltransferase YwnH |Bacillus subtilis [TaxId: 1423]
 d1iica1 :    (LYS90)  (GLY207)   [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d4ag7a_ :    (GLY35)  (CYS141)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.108