Tableau information
Concept source: d1uoka2 amino acid (a.a.) range (LYS176)(PHE281)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: HEHHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS176) (GLY192) H1
(ASP194) (VAL200) E2
(VAL200) (LYS206) H3
(ASN232) (GLU242) H4
(MET251) (PRO257) E5
(THR260) (GLY269) H6
(GLN276) (PHE281) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 145.7° E2
H3 -156.3° 56.3° H3
H4 -40.8° 163.2° 115.5° H4
E5 134.9° -10.8° -66.5° 160.7° E5
H6 -63.6° 148.3° 93.0° -23.8° 156.0° H6
E7 108.2° -37.7° -91.7° 139.6° -26.9° 156.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2nv2c_ : (ALA28) (SER104) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Bacillus subtilis [TaxId: 1423]
d1j0ja3 : (TRP316) (TYR377) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Neopullulanase, central domain |Bacillus stearothermophilus [TaxId: 1422]
d1j8da_ : (GLN2) (GLY80) [view usage] : c.108.1.5 |HAD-like |HAD-like |Probable phosphatase YrbI |Probable phosphatase YrbI |Haemophilus influenzae, HI1679 [TaxId: 727]
d3qr3a_ : (GLY43) (MET146) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Hypocrea jecorina [TaxId: 51453]
d1w9xa2 : (PRO211) (VAL291) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus halmapalus [TaxId: 79882]
d1ud3a2 : (HIS205) (VAL286) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus sp., ksm-k38 [TaxId: 1409]
d3fa4l_ : (GLN147) (VAL216) [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d1rh9a1 : (ILE263) (GLN361) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-mannanase |Tomato (Lycopersicon esculentum) [TaxId: 4081]
d2o14a2 : (GLY219) (LEU315) [view usage] : c.23.10.8 |Flavodoxin-like |SGNH hydrolase |YxiM C-terminal domain-like |Hypothetical protein YxiM |Bacillus subtilis [TaxId: 1423]
d3fhta1 : (TRP224) (ARG299) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qoma_ : (TYR73) (PHE178) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Lactobacillus plantarum [TaxId: 1590]
d4awua_ : (THR152) (VAL272) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d1hvxa2 : (HIS208) (ALA289) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus stearothermophilus [TaxId: 1422]
d2bhza3 : (VAL256) (ASP328) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Glycosyltrehalose trehalohydrolase, central domain |Deinococcus radiodurans [TaxId: 1299]
d3vofa_ : (ALA167) (GLY283) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d1vcva1 : (PRO65) (SER148) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Deoxyribose-phosphate aldolase DeoC |Pyrobaculum aerophilum [TaxId: 13773]
d4pmua_ : (ALA49) (VAL153) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d3qz6a_ : (ILE156) (SER233) [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Desulfitobacterium hafniense [TaxId: 272564]
d1v1ba_ : (ASP119) (SER193) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |2-keto-3-deoxygluconate kinase |Thermus thermophilus [TaxId: 274]
d1bvnp2 : (LYS172) (PHE256) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Pig (Sus scrofa) [TaxId: 9823]
d3tqka_ : (ASP151) (GLY240) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d4o0ma1 : (LEU124) (GLY214) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d3a64a_ : (ALA167) (GLY283) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d1rp8a2 : (ASN154) (PHE248) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Plant alpha-amylase |Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
d1t8qa_ : (THR147) (ALA237) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d2vepa_ : (SER33) (THR105) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |automated matches |Streptomyces coelicolor [TaxId: 1902]
d2zbta_ : (PRO31) (SER107) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3lg3a_ : (GLY75) (GLU187) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |automated matches |Yersinia pestis [TaxId: 632]
d4lrtc1 : (GLU73) (LEU144) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Thermomonospora curvata [TaxId: 471852]
d1xg3c_ : (SER133) (GLU213) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |2-methylisocitrate lyase |Escherichia coli [TaxId: 562]
d4qs5a_ : (GLU71) (ASN158) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 279238]
d1y8ba_ : (LEU435) (PRO536) [view usage] : c.1.13.1 |TIM beta/alpha-barrel |Malate synthase G |Malate synthase G |Malate synthase G |Escherichia coli [TaxId: 562]
d4ee9a_ : (PHE35) (MET133) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Uncultured bacterium [TaxId: 77133]
d2vx7a_ : (GLY180) (TYR297) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
d1gjua2 : (ASP421) (THR501) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Maltosyltransferase |Thermotoga maritima [TaxId: 2336]
d1qwga_ : (ASP55) (GLY135) [view usage] : c.1.27.1 |TIM beta/alpha-barrel |(2r)-phospho-3-sulfolactate synthase ComA |(2r)-phospho-3-sulfolactate synthase ComA |(2r)-phospho-3-sulfolactate synthase ComA |Methanococcus jannaschii [TaxId: 2190]
d3k96a1 : (ASP68) (GLY137) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
d1k1ek_ : (GLN2) (GLY80) [view usage] : c.108.1.5 |HAD-like |HAD-like |Probable phosphatase YrbI |Probable phosphatase YrbI |Haemophilus influenzae, HI1679 [TaxId: 727]
d1z32x2 : (LYS172) (PHE256) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
d3ppha1 : (LEU197) (ASP276) [view usage] : c.1.22.0 |TIM beta/alpha-barrel |UROD/MetE-like |automated matches |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d2x7va_ : (SER45) (GLU144) [view usage] : c.1.15.0 |TIM beta/alpha-barrel |Xylose isomerase-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1vfma3 : (PRO301) (TYR374) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Thermoactinomyces vulgaris [TaxId: 2026]
d3ro8a_ : (THR29) (VAL136) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus sp. [TaxId: 324057]
d4iqdb_ : (ALA36) (GLU121) [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1amya2 : (LEU154) (PHE246) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Plant alpha-amylase |Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
d1ydya_ : (THR147) (ALA237) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d1t8qb_ : (THR147) (ALA237) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d1v19a_ : (ASP119) (SER193) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |2-keto-3-deoxygluconate kinase |Thermus thermophilus [TaxId: 274]
d3fa3a_ : (GLN147) (VAL216) [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d3abxa_ : (ALA167) (GLY283) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d2p50a2 : (THR199) (THR275) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Escherichia coli [TaxId: 562]
d1u1ha1 : (LEU185) (ASP267) [view usage] : c.1.22.2 |TIM beta/alpha-barrel |UROD/MetE-like |Cobalamin-independent methionine synthase |5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, c.6, c.108, c.72, c.23, c.37