Protein Concepts Dictionary

Tableau information

Concept source:  d1kgea_  amino acid (a.a.) range (ALA69)(LEU155)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA69)   (PRO87) H1
	   (LYS93)   (ASN98) E2
	  (SER106)  (TYR112) H3
	  (LYS115)  (LEU119) E4
	  (LEU119)  (SER130) H5
	  (ASN132)  (GLY143) H6
	  (ILE145)  (LEU155) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
E2      133.1°   E2                                        
H3       52.1°  -82.4°   H3                                 
E4      -79.6°  140.1° -130.9°   E4                          
H5     -160.7°   66.2°  146.1°  -83.0°   H5                   
H6       42.0°  119.6°   71.3°  -65.9° -135.0°   H6            
H7       84.3° -138.0°  136.2°    6.7°  -77.7°   72.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3huma1 :    (ALA74)  (ILE169)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Pencillin binding protein 4 (PbpD), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
 d1kgga_ :    (SER72)  (GLY156)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
 d4d2ob_ :    (GLN69)  (GLY156)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Citrobacter freundii [TaxId: 546]
 d1e25a_ :    (PHE72)  (GLY156)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Pseudomonas aeruginosa, PER-1 [TaxId: 287]
 d3v3rb_ :    (PHE66)  (GLY151)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
 d1djba_ :    (SER72)  (LEU155)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
 d1omeb_ :    (ALA69)  (GLY156)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
 d1omea_ :    (SER72)  (LEU155)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
 d3it9d1 :    (ALA39)  (LEU136)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.3