Protein Concepts Dictionary

Tableau information

Concept source:  d4ifka_  amino acid (a.a.) range (SER259)(PHE329)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER259)  (ARG264) H1
	  (ARG264)  (ALA270) E2
	  (PRO274)  (GLY285) H3
	  (MET290)  (PRO296) E4
	  (GLY305)  (SER311) H5
	  (GLU315)  (ILE321) H6
	  (SER323)  (PHE329) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
E2      -85.9°   E2                                        
H3      -84.3° -168.9°   H3                                 
E4       74.1°  -44.8°  136.0°   E4                          
H5     -125.9°   99.3°  -82.2°  141.2°   H5                   
H6       55.6°  -92.5°   86.4°  -49.8°  168.1°   H6            
H7       66.8° -131.6°   47.9°  -88.2°  129.1°  -39.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4epkb_ :   (SER259)  (PHE329)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
 d4igna_ :   (TYR258)  (LEU328)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2hbxa_ :   (SER259)  (PHE329)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
 d3ij6c_ :   (ASP222)  (ILE302)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 1579]
 d4eria_ :   (SER259)  (PHE329)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
 d4ofca_ :   (TYR258)  (LEU328)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2wm1a_ :   (ASN254)  (PHE327)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2hbva1 :   (SER259)  (PHE330)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
 d4ifkb_ :   (SER259)  (PHE329)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
 d4ifka_ :   (SER259)  (PHE329)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
 d3ij6a_ :   (ASP222)  (LYS303)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 1579]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1