Protein Concepts Dictionary

Tableau information

Concept source:  d2zida1  amino acid (a.a.) range (LYS213)(TRP309)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HEHEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LYS213)  (SER225) H1
	  (LEU231)  (THR237) E2
	  (THR241)  (ASN250) H3
	  (SER257)  (PHE262) E4
	  (PHE262)  (LYS270) H5
	  (VAL284)  (GLU299) H6
	  (GLY303)  (TRP309) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
E2      160.6°   E2                                        
H3      -22.2°  159.1°   H3                                 
E4      139.1°  -26.9°  157.1°   E4                          
H5      133.8°  -29.2°  149.0°   -9.3°   H5                   
H6      -58.6°  135.1°  -38.4°  161.9°  162.1°   H6            
E7       94.0°  -69.5°  113.0°  -45.1°  -40.4° -151.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1m53a2 :   (ASN272)  (LEU365)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Isomaltulose synthase PalI |Klebsiella sp., lx3 [TaxId: 576]
 d4mb1a1 :   (ARG232)  (PHE328)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus subtilis [TaxId: 224308]
 d2zica1 :   (LYS213)  (TRP309)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Streptococcus mutans
 d2zida1 :   (LYS213)  (TRP309)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Streptococcus mutans
 d4maza1 :   (ARG232)  (PHE328)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus subtilis [TaxId: 224308]
 d2pwfa1 :   (GLU241)  (LEU323)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Pseudomonas mesoacidophila [TaxId: 265293]
 d4go9b1 :   (ASN231)  (LEU323)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Pseudomonas mesoacidophila [TaxId: 265293]
 d4go8b1 :   (ASN231)  (LEU323)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Pseudomonas mesoacidophila [TaxId: 265293]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1