Protein Concepts Dictionary

Tableau information

Concept source:  d1bd9a_  amino acid (a.a.) range (LYS7)(SER75)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HEEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS7)   (SER13) H1
	   (HIS26)   (ALA30) E2
	   (GLY31)   (ASP35) E3
	   (THR42)   (LYS47) H4
	   (SER52)   (ASP56) E5
	   (LEU63)   (THR69) E6
	   (ASP70)   (SER75) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
E2       59.8°   E2                                        
E3      113.5°  171.2°   E3                                 
H4     -124.8°   85.2° -103.6°   H4                          
E5     -129.0°  167.1°  -16.1°  -94.4°   E5                   
E6       25.1°  -70.3°  101.3° -149.0°  113.7°   E6            
H7       12.6°  -62.0°  110.2° -135.9°  124.2°   13.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2qyqa_ :     (LYS7)   (HIS85)   [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Human (Homo sapiens) [TaxId: 9606]
 d1bd9a_ :     (LYS7)   (SER75)   [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Human (Homo sapiens) [TaxId: 9606]
 d1bd9b_ :     (ASP4)   (SER75)   [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Human (Homo sapiens) [TaxId: 9606]
 d2iqxc_ :     (ASP4)   (ARG82)   [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1kn3a_ :     (MET7)   (SER75)   [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Mouse (Mus musculus), PEBP-2 [TaxId: 10090]
 d1behb_ :     (LYS7)   (ARG82)   [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.17