Tableau information
Concept source: d1cov3_ amino acid (a.a.) range (THR98)(GLN173)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: HEEEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR98) (THR108) H1
(THR108) (GLY112) E2
(GLY112) (GLY122) E3
(GLY128) (TYR134) E4
(LYS144) (MET149) H5
(THR152) (VAL158) E6
(SER162) (GLN173) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 130.8° E2
E3 -158.8° -69.2° E3
E4 4.7° -126.2° 163.5° E4
H5 63.0° -78.5° -136.3° 58.9° H5
E6 156.6° 67.8° -23.3° 158.8° -116.4° E6
E7 -18.6° -117.5° 157.3° -17.0° 65.2° -174.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1bev3_ : (LEU98) (ALA172) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Bovine enterovirus coat proteins |Bovine enterovirus, VG-5-27 [TaxId: 12064]
d1fpn1_ : (ALA105) (PRO183) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus A 2 (HRV-2) [TaxId: 12130]
d1bbt3_ : (THR89) (ALA164) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Aphthovirus (Foot-and-mouth disease virus) coat proteins |FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]
d1za7a_ : (SER80) (GLU140) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |automated matches |Cowpea chlorotic mottle virus [TaxId: 12303]
d1ihma_ : (ASN1090) (ASN1167) [view usage] : b.121.4.3 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Caliciviridae-like VP |Calicivirus capsid protein |Norwalk virus [TaxId: 11983]
d1ny722 : (MET231) (SER300) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |CPMV (Cowpea mosaic virus) [TaxId: 12264]
d1piv1_ : (LEU118) (PRO197) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 3, strain Sabin [TaxId: 12086]
d1bmv22 : (MET2049) (SER2118) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d1js9c_ : (SER79) (ASP139) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |BMV (Brome mosaic virus) [TaxId: 12302]
d1js9b_ : (SER79) (ASP139) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |BMV (Brome mosaic virus) [TaxId: 12302]
d1qgc2_ : (GLY89) (VAL165) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |FMDV complexed with a neutralizing Fab fragment |Foot-and-mouth disease virus [TaxId: 12110]
d3zfec_ : (THR99) (ASN174) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human enterovirus 71 [TaxId: 39054]
d1js9a_ : (SER79) (ASP139) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |BMV (Brome mosaic virus) [TaxId: 12302]
d1vbe1_ : (LEU118) (PRO197) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 3, strain Sabin [TaxId: 12086]
d1ihmb_ : (ASN2090) (ASP2164) [view usage] : b.121.4.3 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Caliciviridae-like VP |Calicivirus capsid protein |Norwalk virus [TaxId: 11983]
d1za7b_ : (SER80) (GLU140) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |automated matches |Cowpea chlorotic mottle virus [TaxId: 12303]
d1a6ca2 : (SER228) (ARG297) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Nepovirus capsid protein |TRSV (Tobacco ringspot virus) [TaxId: 12282]
d1fod1_ : (THR60) (PRO122) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Aphthovirus (Foot-and-mouth disease virus) coat proteins |FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]
d3vbfc_ : (THR99) (ASN174) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human enterovirus 71 [TaxId: 39054]
d3vboc_ : (THR99) (VAL168) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d1yc61_ : (SER79) (ASP139) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |BMV (Brome mosaic virus) [TaxId: 12302]
d1pgl22 : (MET231) (SER300) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.6, b.121