Protein Concepts Dictionary

Tableau information

Concept source:  d2nzha_  amino acid (a.a.) range (VAL3)(ILE60)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HEEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (VAL3)    (LYS9) H1
	    (LYS9)   (THR14) E2
	   (VAL18)   (GLU22) E3
	   (PRO29)   (GLY38) E4
	   (GLY42)   (SER47) E5
	   (ILE50)   (LYS55) H6
	   (LYS55)   (ILE60) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
E2      -52.4°   E2                                        
E3      103.3°  -96.0°   E3                                 
E4      -77.6°   90.9°  172.0°   E4                          
E5      112.2°  -92.4°  -14.6°  169.5°   E5                   
H6      -45.5°   22.4° -117.6°   68.9° -114.8°   H6            
H7      -85.4°   92.6°  170.3°   -8.8°  160.8°   71.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2nzha_ :     (VAL3)   (ILE60)   [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d2q2ha_ :     (TYR7)   (VAL63)   [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
 d2nzoa_ :     (ILE4)   (ILE60)   [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d2nzhb_ :     (VAL3)   (ILE60)   [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d1gd7a_ :     (PRO3)   (VAL59)   [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |TRBP111 homolog CsaA |Thermus thermophilus [TaxId: 274]
 d2q2ia_ :     (TYR7)   (VAL63)   [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
 d3g48a_ :     (PHE4)   (ILE59)   [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.40