Tableau information
Concept source: d1vaka_ amino acid (a.a.) range (GLY105)(GLN168)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: HEEEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY105) (SER116) H1
(SER116) (TRP120) E2
(LEU121) (CYS131) E3
(ALA136) (ASP146) E4
(ALA148) (SER154) E5
(SER154) (ASN160) H6
(ARG162) (GLN168) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 128.8° E2
E3 -164.4° -66.8° E3
E4 -12.9° -122.4° 164.8° E4
E5 166.5° 39.2° -28.4° 161.2° E5
H6 43.1° -96.4° -145.4° 49.4° -124.5° H6
E7 160.5° 66.3° -13.3° 171.3° -27.5° -132.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2tbvc_ : (LEU145) (ALA205) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Tombusvirus coat protein |TBSV (Tomato bushy stunt virus) [TaxId: 12145]
d1c8nb_ : (PRO119) (PRO182) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Necrovirus coat protein |TNV (Tobacco necrosis virus) [TaxId: 12054]
d2tbva_ : (PRO146) (ALA205) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Tombusvirus coat protein |TBSV (Tomato bushy stunt virus) [TaxId: 12145]
d1smva_ : (GLY97) (GLN160) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d4sbva_ : (GLY97) (PRO160) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SBMV (Southern bean mosaic virus), cow pea strain [TaxId: 12139]
d1vaka_ : (GLY105) (GLN168) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.121